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Bra009201 protein (Brassica rapa) - STRING interaction network
"Bra009201" - AT5G52820 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009201AT5G52820 (E=6e-204) | WD-40 repeat family protein / notchless protein, putative (480 aa)    
Predicted Functional Partners:
Bra026921
AT1G13160 (E=9e-292) | SDA1 family protein (808 aa)
     
 
  0.988
Bra040357
AT3G07050 (E=1e-165) | GTP-binding family protein (615 aa)
     
 
  0.987
Bra029617
AT3G07050 (E=4e-230) | GTP-binding family protein (594 aa)
     
 
  0.987
Bra001232
AT3G07050 (E=2e-216) | GTP-binding family protein (584 aa)
     
 
  0.987
Bra000863
AT4G02790 (E=5e-172) | GTP-binding family protein (370 aa)
     
 
  0.987
Bra019003
AT1G52980 (E=3e-247) | GTP-binding family protein (582 aa)
     
 
  0.984
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
     
 
  0.973
Bra012490
AT1G25260 (E=7e-111) | acidic ribosomal protein P0-related (229 aa)
     
 
  0.973
Bra010982
AT1G25260 (E=2e-111) | acidic ribosomal protein P0-related (229 aa)
     
 
  0.973
Bra018002
AT3G49180 (E=5e-097) RID3 | RID3 (ROOT INITIATION DEFECTIVE 3); nucleotide binding (358 aa)
 
  0.973
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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