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Bra009205 protein (Brassica rapa) - STRING interaction network
"Bra009205" - AT5G06550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009205AT5G06550 (E=1e-217) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- cell surface receptor linked signal transduction; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 12 growth stages; CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810), Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro-IPR003347), Transcription factor jumonji (InterPro-IPR013129); BEST Arabidopsis thaliana protein match is- transferase, transferring glycosyl groups (TAIR-AT1G78280.1); Has 1299 Blast hits to 1289 proteins in 204 species- Archae - 0; Bacteria - 195; Metazoa - [...] (512 aa)    
Predicted Functional Partners:
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
     
      0.898
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
     
      0.898
Bra003091
AT5G53000 (E=3e-167) TAP46 | TAP46 (2A phosphatase associated protein of 46 kD); protein phosphatase type 2A regulator (405 aa)
       
      0.764
Bra041007
AT1G44910 (E=6e-210) | protein binding (1047 aa)
       
      0.612
Bra028124
AT5G37510 (E=0.0) EMB1467 | EMB1467 (embryo defective 1467); NADH dehydrogenase (ubiquinone)/ NADH dehydrogenase/ electron carrier/ iron-sulfur cluster binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH (746 aa)
       
      0.612
Bra022445
AT3G19670 (E=0.0) | protein binding (1119 aa)
       
      0.612
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
       
      0.612
Bra033126
AT4G11820 (E=4e-259) MVA1 | MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase (461 aa)
       
      0.543
Bra014870
AT4G11820 (E=8e-260) MVA1 | MVA1; acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase (461 aa)
       
      0.543
Bra031226
AT3G18140 (E=4e-082) | transducin family protein / WD-40 repeat family protein (331 aa)
       
      0.517
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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