STRINGSTRING
Bra009206 protein (Brassica rapa) - STRING interaction network
"Bra009206" - AT3G54740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009206AT3G54740 (E=4e-091) | unknown protein (427 aa)    
Predicted Functional Partners:
Bra006561
AT5G20490 (E=0.0) XIK, ATXIK, XI-17 | XIK; motor/ protein binding (1537 aa)
           
  0.499
Bra030993
AT1G17580 (E=0.0) MYA1, ATMYA1, XI-1 | MYA1 (MYOSIN 1); motor/ protein binding (1510 aa)
           
  0.418
Bra003539
AT1G79940 (E=0.0) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (686 aa)
           
  0.418
Bra008966
AT5G11390 (E=3e-138) | unknown protein (656 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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