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Bra009208 protein (Brassica rapa) - STRING interaction network
"Bra009208" - AT5G06580 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009208AT5G06580 (E=9e-274) | FAD linked oxidase family protein (568 aa)    
Predicted Functional Partners:
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
 
  0.932
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
 
  0.932
Bra026240
AT4G17260 (E=4e-180) | L-lactate dehydrogenase, putative (350 aa)
       
  0.909
Bra012671
AT4G17260 (E=2e-176) | L-lactate dehydrogenase, putative (350 aa)
       
  0.909
Bra022618
AT5G52920 (E=5e-198) PKP1, PKP-BETA1, PKP2 | PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase (606 aa)
     
  0.906
Bra038654
AT5G63680 (E=4e-282) | pyruvate kinase, putative (510 aa)
     
  0.906
Bra037750
AT5G63680 (E=5e-277) | pyruvate kinase, putative (510 aa)
     
  0.906
Bra028545
AT3G52990 (E=1e-294) | pyruvate kinase, putative (527 aa)
     
  0.906
Bra023780
AT3G22960 (E=1e-274) PKP1, PKP-ALPHA | PKP-ALPHA; pyruvate kinase (577 aa)
     
  0.906
Bra022618.1-P
AT5G52920 (E=5e-198) PKP1, PKP-BETA1, PKP2 | PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase (606 aa)
     
  0.906
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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