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Bra009216 protein (Brassica rapa) - STRING interaction network
"Bra009216" - AT5G06680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009216AT5G06680 (E=5e-099) SPC98, ATGCP3, ATSPC98, GCP3 | SPC98 (SPINDLE POLE BODY COMPONENT 98); tubulin binding ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (643 aa)    
Predicted Functional Partners:
Bra007622
AT3G61650 (E=2e-273) TUBG1 | TUBG1 (GAMMA-TUBULIN); GTP binding / GTPase/ structural molecule ; Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome (473 aa)
     
  0.987
Bra006406
AT5G17410 (E=6e-242) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (606 aa)
     
0.977
Bra013980
AT5G17410 (E=1e-074) | tubulin family protein ; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome (541 aa)
     
0.977
Bra015965
AT1G73790 (E=7e-023) | unknown protein (69 aa)
       
 
  0.942
Bra003829
AT4G09550 (E=5e-024) | unknown protein (68 aa)
       
 
  0.942
Bra003116
AT5G44340 (E=6e-072) TUB4 | TUB4; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (233 aa)
     
  0.932
Bra003116.1-P
AT5G44340 (E=6e-072) TUB4 | TUB4; structural constituent of cytoskeleton (233 aa)
     
  0.932
Bra041172
AT5G12250 (E=3e-070) TUB6 | TUB6 (BETA-6 TUBULIN); structural constituent of cytoskeleton (135 aa)
     
  0.932
Bra039987
AT2G29550 (E=2e-240) TUB7 | TUB7; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (449 aa)
     
  0.932
Bra039506
AT5G44340 (E=5e-246) TUB4 | TUB4; structural constituent of cytoskeleton ; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain (446 aa)
     
  0.932
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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