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Bra009219 protein (Brassica rapa) - STRING interaction network
"Bra009219" - AT5G06710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009219AT5G06710 (E=2e-127) HAT14 | HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA); DNA binding / transcription factor (340 aa)    
Predicted Functional Partners:
Bra007530
AT3G60390 (E=3e-097) HAT3 | HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3); transcription factor (311 aa)
       
 
0.906
Bra040094
AT4G16780 (E=3e-124) ATHB-2, HAT4, ATHB2 | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (285 aa)
       
 
0.903
Bra040335
AT2G44910 (E=9e-065) ATHB4, ATHB-4 | ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4); DNA binding / transcription factor (321 aa)
       
 
0.617
Bra024948
AT5G47370 (E=1e-106) HAT2 | HAT2; DNA binding / transcription factor/ transcription repressor (276 aa)
       
 
0.617
Bra035705
AT2G28370 (E=7e-083) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0497, trans-membrane plant (InterPro-IPR006702); BEST Arabidopsis thaliana protein match is- integral membrane protein, putative (TAIR-AT2G37200.1); Has 100 Blast hits to 100 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (181 aa)
           
  0.518
Bra011954
AT2G28370 (E=3e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised protein family UPF0497, trans-membrane plant (InterPro-IPR006702); BEST Arabidopsis thaliana protein match is- integral membrane protein, putative (TAIR-AT2G37200.1); Has 100 Blast hits to 100 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (183 aa)
           
  0.493
Bra011786
AT4G37790 (E=1e-116) HAT22 | HAT22; transcription factor (282 aa)
       
 
0.475
Bra040484
AT2G46790 (E=2e-152) APRR9, PRR9, TL1 | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9); protein binding / transcription regulator/ two-component response regulator (824 aa)
       
 
  0.456
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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