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Bra009229 protein (Brassica rapa) - STRING interaction network
"Bra009229" - AT4G34710 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009229AT4G34710 (E=1e-123) ADC2, SPE2, ATADC2 | ADC2 (ARGININE DECARBOXYLASE 2); arginine decarboxylase (273 aa)    
Predicted Functional Partners:
Bra000659
AT4G08900 (E=4e-178) | arginase (341 aa)
     
  0.871
Bra009326
AT5G08170 (E=3e-156) EMB1873, ATAIH | EMB1873 (EMBRYO DEFECTIVE 1873); agmatine deiminase (366 aa)
       
  0.656
Bra005974
AT5G08170 (E=9e-208) EMB1873, ATAIH | EMB1873 (EMBRYO DEFECTIVE 1873); agmatine deiminase (385 aa)
       
  0.656
Bra024620
AT1G70310 (E=8e-158) SPDS2 | SPDS2 (spermidine synthase 2); spermidine synthase (344 aa)
       
  0.578
Bra022631
AT5G53120 (E=2e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (355 aa)
       
  0.578
Bra020045
AT5G19530 (E=6e-184) ACL5 | ACL5 (ACAULIS 5); spermine synthase/ thermospermine synthase (332 aa)
       
  0.578
Bra016329
AT1G23820 (E=3e-168) SPDS1 | SPDS1 (spermidine synthase 1); spermidine synthase (333 aa)
       
  0.578
Bra012389
AT1G23820 (E=2e-128) SPDS1 | SPDS1 (spermidine synthase 1); spermidine synthase (303 aa)
       
  0.578
Bra012388
AT1G23820 (E=4e-028) SPDS1 | SPDS1 (spermidine synthase 1); spermidine synthase (95 aa)
       
  0.578
Bra003082
AT5G53120 (E=9e-184) SPDS3, SPMS | SPDS3 (SPERMIDINE SYNTHASE 3); spermidine synthase/ spermine synthase (361 aa)
       
  0.578
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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