STRINGSTRING
Bra009232 protein (Brassica rapa) - STRING interaction network
"Bra009232" - AT5G06830 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009232AT5G06830 (E=9e-268) | unknown protein (544 aa)    
Predicted Functional Partners:
Bra018217
AT3G46220 (E=0.0) | unknown protein (804 aa)
     
 
  0.957
Bra026377
AT4G27120 (E=2e-086) | unknown protein (303 aa)
     
 
  0.953
Bra019069
AT4G27120 (E=6e-082) | unknown protein (305 aa)
     
 
  0.953
Bra000558
AT2G26170 (E=5e-264) CYP711A1, MAX1 | CYP711A1; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (531 aa)
       
      0.900
Bra039439
AT3G05420 (E=2e-309) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (667 aa)
     
   
  0.453
Bra040219
AT3G05420 (E=0.0) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (665 aa)
           
  0.452
Bra020582
AT3G05420 (E=1e-271) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (667 aa)
           
  0.452
Bra001147
AT3G05420 (E=2e-309) ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding (683 aa)
           
  0.452
Bra035706
AT2G28360 (E=7e-283) | INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- SIT4 phosphatase-associated protein (InterPro-IPR007587); BEST Arabidopsis thaliana protein match is- SIT4 phosphatase-associated family protein (TAIR-AT1G07990.1); Has 1431 Blast hits to 1107 proteins in 182 species- Archae - 2; Bacteria - 108; Metazoa - 552; Fungi - 305; Plants - 89; Viruses - 18; Other Eukaryotes - 357 (source- NCBI BLink). (767 aa)
     
   
  0.405
Bra014790
AT3G54760 (E=4e-170) | dentin sialophosphoprotein-related (710 aa)
     
   
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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