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Bra009234 protein (Brassica rapa) - STRING interaction network
"Bra009234" - AT5G06860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009234AT5G06860 (E=8e-146) PGIP1, ATPGIP1 | PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding (331 aa)    
Predicted Functional Partners:
Bra021024
AT1G71400 (E=1e-074) AtRLP12 | AtRLP12 (Receptor Like Protein 12); protein binding (292 aa)
   
          0.525
Bra031727
AT1G11130 (E=1e-087) SUB, SCM, SRF9 | SUB (STRUBBELIG); protein binding / receptor signaling protein serine/threonine kinase (347 aa)
   
          0.511
Bra018384
AT2G29500 (E=3e-053) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (159 aa)
           
  0.479
Bra018384.1-P
AT2G29500 (E=3e-053) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (159 aa)
           
  0.479
Bra018383
AT2G29500 (E=1e-063) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (156 aa)
           
  0.479
Bra028967
AT5G55630 (E=8e-150) KCO1, TPK1, ATKCO1, ATTPK1 | ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel (363 aa)
           
  0.426
Bra023490
AT5G14880 (E=0.0) | potassium transporter, putative ; Potassium transporter (1240 aa)
           
  0.426
Bra017430
AT2G01980 (E=0.0) SOS1, ATSOS1, ATNHX7 | SOS1 (SALT OVERLY SENSITIVE 1); sodium-hydrogen antiporter (1139 aa)
           
  0.426
Bra016225
AT1G70300 (E=0.0) KUP6 | KUP6; potassium ion transmembrane transporter ; Potassium transporter (783 aa)
           
  0.426
Bra004443
AT2G47600 (E=5e-284) ATMHX, MHX1, ATMHX1 | ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER); calcium-sodium antiporter/ cation-cation antiporter (537 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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