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Bra009237 protein (Brassica rapa) - STRING interaction network
"Bra009237" - AT5G06860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009237AT5G06860 (E=5e-136) PGIP1, ATPGIP1 | PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding (336 aa)    
Predicted Functional Partners:
Bra030201
AT5G63930 (E=9e-041) | leucine-rich repeat transmembrane protein kinase, putative (99 aa)
   
          0.516
Bra037450
AT5G48940 (E=8e-026) | leucine-rich repeat transmembrane protein kinase, putative (116 aa)
   
          0.509
Bra018384
AT2G29500 (E=3e-053) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (159 aa)
           
  0.479
Bra018384.1-P
AT2G29500 (E=3e-053) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (159 aa)
           
  0.479
Bra018383
AT2G29500 (E=1e-063) | 17.6 kDa class I small heat shock protein (HSP17.6B-CI) (156 aa)
           
  0.479
Bra024514
AT2G17440 (E=5e-157) | leucine-rich repeat family protein (500 aa)
   
          0.435
Bra032935
AT3G26500 (E=2e-189) | leucine-rich repeat family protein (446 aa)
   
          0.429
Bra028967
AT5G55630 (E=8e-150) KCO1, TPK1, ATKCO1, ATTPK1 | ATKCO1; calcium-activated potassium channel/ ion channel/ outward rectifier potassium channel (363 aa)
           
  0.426
Bra023490
AT5G14880 (E=0.0) | potassium transporter, putative ; Potassium transporter (1240 aa)
           
  0.426
Bra017430
AT2G01980 (E=0.0) SOS1, ATSOS1, ATNHX7 | SOS1 (SALT OVERLY SENSITIVE 1); sodium-hydrogen antiporter (1139 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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