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Bra009238 protein (Brassica rapa) - STRING interaction network
"Bra009238" - AT5G06860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009238AT5G06860 (E=4e-133) PGIP1, ATPGIP1 | PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding (332 aa)    
Predicted Functional Partners:
Bra030201
AT5G63930 (E=9e-041) | leucine-rich repeat transmembrane protein kinase, putative (99 aa)
   
          0.517
Bra031727
AT1G11130 (E=1e-087) SUB, SCM, SRF9 | SUB (STRUBBELIG); protein binding / receptor signaling protein serine/threonine kinase (347 aa)
   
          0.510
Bra037450
AT5G48940 (E=8e-026) | leucine-rich repeat transmembrane protein kinase, putative (116 aa)
   
          0.509
Bra020974
AT3G56370 (E=4e-030) | leucine-rich repeat transmembrane protein kinase, putative (145 aa)
   
          0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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