STRINGSTRING
Bra009239 protein (Brassica rapa) - STRING interaction network
"Bra009239" - AT5G06930 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009239AT5G06930 (E=8e-278) | LOCATED IN- chloroplast; EXPRESSED IN- 15 plant structures; EXPRESSED DURING- 7 growth stages; BEST Arabidopsis thaliana protein match is- nucleolar protein gar2-related (TAIR-AT2G42320.2); Has 3144 Blast hits to 1363 proteins in 247 species- Archae - 2; Bacteria - 721; Metazoa - 835; Fungi - 297; Plants - 80; Viruses - 10; Other Eukaryotes - 1199 (source- NCBI BLink). (713 aa)    
Predicted Functional Partners:
Bra036094
AT3G50620 (E=5e-144) | nodulation protein-related (329 aa)
           
  0.666
Bra012895
AT3G50620 (E=4e-155) | nodulation protein-related (308 aa)
           
  0.491
Bra002426
AT5G22740 (E=7e-312) ATCSLA02, CSLA02, ATCSLA2 | ATCSLA02; mannan synthase/ transferase, transferring glycosyl groups (969 aa)
           
  0.475
Bra005651
AT2G31660 (E=0.0) SAD2, URM9 | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2); binding / protein transporter (1040 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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