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Bra009244 protein (Brassica rapa) - STRING interaction network
"Bra009244" - AT5G61410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra009244AT5G61410 (E=1e-137) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (275 aa)    
Predicted Functional Partners:
Bra014473
AT3G60750 (E=0.0) | transketolase, putative (735 aa)
   
  0.987
Bra007555
AT3G60750 (E=0.0) | transketolase, putative (738 aa)
   
  0.987
Bra004898
AT2G45290 (E=0.0) | transketolase, putative (736 aa)
   
  0.987
Bra040406
AT3G04790 (E=2e-127) | ribose 5-phosphate isomerase-related (276 aa)
   
  0.962
Bra040120
AT3G04790 (E=8e-114) | ribose 5-phosphate isomerase-related (275 aa)
   
  0.962
Bra033861
AT1G32060 (E=2e-196) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (395 aa)
   
 
  0.960
Bra023235
AT1G32060 (E=3e-210) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (397 aa)
   
 
  0.960
Bra033747
AT5G44520 (E=1e-124) | ribose 5-phosphate isomerase-related (283 aa)
   
  0.960
Bra014328
AT2G01290 (E=9e-132) | ribose-5-phosphate isomerase (267 aa)
   
  0.954
Bra007961
AT1G71100 (E=5e-118) RSW10 | RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase (259 aa)
   
  0.954
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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