STRINGSTRING
Bo7g061500.1 protein (Brassica oleracea) - STRING interaction network
"Bo7g061500.1" - annotation not available in Brassica oleracea
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bo7g061500.1annotation not available (223 aa)    
Predicted Functional Partners:
106343390
annotation not available (79 aa)
     
 
  0.993
Bo1g141020.1
annotation not available (79 aa)
     
 
  0.993
106303909
annotation not available (88 aa)
     
 
  0.993
Bo3g175660.1
annotation not available (129 aa)
     
 
  0.993
106298641
annotation not available (98 aa)
     
 
  0.992
106325259
annotation not available (98 aa)
     
 
  0.992
106316876
Small nuclear ribonucleoprotein family protein (89 aa)
     
 
  0.992
106319210
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (187 aa)
     
 
  0.992
Bo3g049980.1
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (160 aa)
     
 
  0.992
Bo9g027340.1
annotation not available (52 aa)
     
 
  0.988
Your Current Organism:
Brassica oleracea
NCBI taxonomy Id: 3712
Other names: B. oleracea, Brassica oleracea, Brassica oleracea L.
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