STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_006686XRN_N domain-containing protein. (492 aa)    
Predicted Functional Partners:
PBRA_000230
RAI1 domain-containing protein.
   
 
 0.925
PBRA_002939
Uncharacterized protein.
    
0.889
PBRA_000292
DRIM domain-containing protein.
   
  0.685
PBRA_003857
BP28CT domain-containing protein.
   
 
  0.670
PBRA_005159
Uncharacterized protein.
   
 0.650
PBRA_003766
Uncharacterized protein.
   
  0.649
PBRA_007163
RRP7 domain-containing protein.
   
  0.649
PBRA_004325
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.642
PBRA_003028
Bms1-type G domain-containing protein.
   
 
 0.639
PBRA_004939
Uncharacterized protein.
   
 0.638
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.