STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_001245Uncharacterized protein. (793 aa)    
Predicted Functional Partners:
PBRA_007453
Uncharacterized protein.
    
 0.804
PBRA_004072
WD_REPEATS_REGION domain-containing protein.
   
 0.802
PBRA_002896
Uncharacterized protein.
    
 0.793
PBRA_006498
Uncharacterized protein.
    
 0.791
PBRA_005057
VASt domain-containing protein.
    
 0.732
PBRA_007209
VASt domain-containing protein.
    
 0.732
PBRA_004176
WD_REPEATS_REGION domain-containing protein.
    
 0.664
PBRA_008899
Uncharacterized protein.
   
 0.617
PBRA_006381
WD_REPEATS_REGION domain-containing protein.
    
 0.613
PBRA_006033
Uncharacterized protein.
    
 0.608
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.