STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54546.1TIGRFAM: exonuclease SbcC. (1008 aa)    
Predicted Functional Partners:
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
 0.944
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.880
AFY55070.1
Hypothetical protein.
 
     0.782
AFY57978.1
NurA domain-containing protein; PFAM: NurA domain.
 
     0.782
AFY55784.1
Putative ATPase; PFAM: Domain of unknown function DUF87.
 
     0.774
AFY53243.1
Putative phosphohydrolase; PFAM: Calcineurin-like phosphoesterase; TIGRFAM: TIGR04168 family protein.
  
 0.745
AFY53886.1
PFAM: Calcineurin-like phosphoesterase.
  
 0.745
AFY54630.1
PFAM: Calcineurin-like phosphoesterase.
  
 0.745
AFY54447.1
Organic solvent tolerance protein OstA; PFAM: Protein of unknown function (DUF3769).
 
    0.722
AFY57800.1
Gas vesicle protein.
  
     0.629
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.