STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY55806.1TIGRFAM: RecB family nuclease, putative, TM0106 family. (527 aa)    
Predicted Functional Partners:
AFY53173.1
Hypothetical protein.
  
     0.720
AFY56794.1
PFAM: Protein of unknown function (DUF2949).
  
     0.708
AFY53770.1
PFAM: Protein of unknown function (DUF1049).
  
     0.703
AFY57084.1
PFAM: Uncharacterised protein family (UPF0104).
  
     0.703
AFY56333.1
Hypothetical protein.
  
     0.660
AFY58710.1
PFAM: Protein of unknown function (DUF2949).
  
     0.660
AFY55657.1
Hypothetical protein.
  
     0.654
AFY53982.1
Bacterial conjugation TrbI-like protein.
  
     0.602
AFY54960.1
Hypothetical protein.
  
     0.598
AFY54030.1
Hypothetical protein.
  
     0.597
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.