STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_0942PFAM: FAD linked oxidase domain protein; KEGG: tac:Ta0542 putative glycolate oxidase. (461 aa)    
Predicted Functional Partners:
Kcr_1188
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: afu:AF0506 iron-sulfur binding reductase.
 
 0.959
gyaR
Glyoxylate reductase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: pho:PH0597 D-3-phosphoglycerate dehydrogenase.
   
 0.936
Kcr_1187
PFAM: FAD linked oxidase domain protein; KEGG: dps:DP0059 probable glycolate oxidase subunit (GlcD).
  
  
 
0.917
Kcr_0941
Fe-S oxidoreductase; PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: chy:CHY_0148 putative reductase.
  
 0.854
fni
Isopentenyl-diphosphate delta-isomerase, type 2; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.606
Kcr_0223
PFAM: Electron transfer flavoprotein alpha subunit; KEGG: pis:Pisl_0755 electron transfer flavoprotein, alpha subunit.
  
 
 0.548
Kcr_0224
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: sto:ST1793 hypothetical electron transfer flavoprotein beta subunit.
  
 
 0.548
Kcr_1037
PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: pas:Pars_2213 electron transfer flavoprotein beta-subunit.
  
 
 0.548
Kcr_1038
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: pis:Pisl_0755 electron transfer flavoprotein, alpha subunit.
  
 
 0.548
Kcr_0486
TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: ape:APE_1570 4-hydroxybenzoate octaprenyl transferase.
    
 0.488
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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