STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kcr_1397PFAM: Ribosomal protein L40e; KEGG: sso:SSO5336 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family. (54 aa)    
Predicted Functional Partners:
rps6e
PFAM: Ribosomal protein S6e; KEGG: mka:MK1446 ribosomal protein S6E (S10); Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.998
rps3
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family.
   
 0.998
rps17
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.998
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.998
rps24e
Ribosomal protein S24E; KEGG: pis:Pisl_1895 transcriptional regulator, fis family; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 0.998
rps3ae
PFAM: ribosomal protein S3Ae; KEGG: smr:Smar_0844 ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 0.998
rps19
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
 0.998
Kcr_0040
Ribosomal protein S25; KEGG: ecu:ECU08_1070 similarity to 40S ribosomal protein S25.
   
 0.997
rps28e
PFAM: Ribosomal protein S28e; KEGG: smr:Smar_0826 ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
  
 0.997
rps17e
KEGG: hbu:Hbut_0482 30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family.
   
 0.997
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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