STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psmB2Proteasome endopeptidase complex; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. (198 aa)    
Predicted Functional Partners:
Kcr_1373
Proteasome endopeptidase complex; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family.
 
 
0.908
psmB1
Proteasome endopeptidase complex; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
  
  
 
0.908
Kcr_0989
PFAM: Mov34/MPN/PAD-1 family protein; KEGG: aae:aq_1691 hypothetical protein.
   
 0.860
Kcr_0299
PFAM: carbohydrate kinase FGGY; KEGG: tpe:Tpen_1373 carbohydrate kinase, FGGY.
   
 0.855
Kcr_1458
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Nucleolar GTP-binding-1 domain protein; KEGG: pab:PAB0558 GTP-binding protein, GTP1/obg family.
  
  
 0.787
Kcr_1460
PFAM: peptidase M20; KEGG: tko:TK2166 ArgE/DapE-related deacylase.
     
 0.765
Kcr_1459
PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: tko:TK1820 membrane-associated metalloprotease, M50 family, containing PDZ domain.
       0.762
Kcr_1397
PFAM: Ribosomal protein L40e; KEGG: sso:SSO5336 50S ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.718
Kcr_0194
AAA family ATPase, CDC48 subfamily; KEGG: ape:APE_2474.1 cell division control protein 48, AAA family; TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
  
 0.629
Kcr_0229
KEGG: afu:AF1297 cell division control protein 48, AAA family (cdc48-1); TIGRFAM: AAA family ATPase, CDC48 subfamily; PFAM: AAA ATPase VAT domain protein; AAA ATPase central domain protein; cell division protein 48 CDC48 domain 2; SMART: AAA ATPase.
  
 0.629
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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