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eIF5A protein (Korarchaeum cryptofilum) - STRING interaction network
"eIF5A" - Translation initiation factor 5A in Korarchaeum cryptofilum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eIF5ATranslation initiation factor 5A; Functions by promoting the formation of the first peptide bond (134 aa)    
Predicted Functional Partners:
Kcr_1570
TIGRFAM- ribosomal protein S5; PFAM- ribosomal protein S5 domain protein; Ribosomal protein S5; KEGG- ape-APE_0346 30S ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family (210 aa)
     
 
  0.998
rpl18
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (195 aa)
   
 
  0.995
Kcr_1377
PFAM- Ribosomal protein L15e; KEGG- smr-Smar_0852 ribosomal protein L15e (195 aa)
 
      0.993
rpl6
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (182 aa)
     
 
  0.992
rpl5
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (185 aa)
     
 
  0.992
rpl21e
PFAM- Ribosomal protein L21e; KEGG- pis-Pisl_0578 ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family (98 aa)
 
 
  0.990
Kcr_1588
PFAM- ribosomal protein S9; KEGG- mth-MTH39 30S ribosomal protein S9/L13; Belongs to the universal ribosomal protein uS9 family (139 aa)
 
 
  0.983
rps4
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (166 aa)
 
 
  0.982
rps13
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (149 aa)
   
 
  0.981
rpl13
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (158 aa)
   
 
  0.980
Your Current Organism:
Korarchaeum cryptofilum
NCBI taxonomy Id: 374847
Other names: C. Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum OPF8, Candidatus Korarchaeum cryptofilum str. OPF8, Candidatus Korarchaeum cryptofilum strain OPF8, Korarchaeum cryptofilum, Korarchaeum cryptofilum OPF8, korarchaeote OPF1-KOR
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