STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxASarcosine oxidase, alpha subunit; Belongs to the GcvT family. (983 aa)    
Predicted Functional Partners:
soxD
Sarcosine oxidase, delta subunit.
 
 0.999
soxB
Sarcosine oxidase, beta subunit.
 
 0.998
soxD-3
Sarcosine oxidase, delta subunit.
 
 0.997
soxD-4
Sarcosine oxidase, delta subunit.
 
 0.996
soxB-4
Sarcosine oxidase, beta subunit.
 
 0.994
soxG
Sarcosine oxidase, gamma subunit.
 
 
 0.983
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.950
soxB-3
Sarcosine oxidase, beta subunit.
 
 
 0.943
RD1_4251
Glutamate synthase family protein, putative; Belongs to the glutamate synthase family.
 
 
 0.931
RD1_4253
Glutamine amidotransferase, class II putative.
 
  
 0.931
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.