STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_0172Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (465 aa)    
Predicted Functional Partners:
RD1_3131
Agmatinase, putative; Belongs to the arginase family.
  
 
  0.925
ald
Aldehyde dehydrogenase family protein, putative.
  
 0.916
ald-2
Aldehyde dehydrogenase family protein, putative; Belongs to the aldehyde dehydrogenase family.
   
 0.904
RD1_2715
Agmatinase, putative; Belongs to the arginase family.
   
 
  0.902
RD1_0165
Oxidoreductase, putative.
 
    0.774
potF
Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
    0.759
RD1_1891
Oxidoreductase, FAD-binding, putative.
 
    0.734
RD1_1892
Glutamine synthetase, putative.
    0.686
RD1_0171
Transcriptional regulator, putative.
 
     0.668
potG
Putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
     0.619
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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