STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_0287enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family. (202 aa)    
Predicted Functional Partners:
bhbD
3-hydroxybutyryl-CoA dehydrogenase.
 
 0.875
RD1_3577
Sensory box histidine kinase/response regulator, putative.
   
 
 0.830
RD1_0288
Dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.827
RD1_3595
Two-component hybrid sensor and regulator, putative.
   
 
 0.824
RD1_0289
Conserved domain protein.
       0.732
RD1_0025
Thiolase, N-terminal domain; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.618
bktB
Beta-ketothiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.618
phbA
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.618
fadA
Fatty acid oxidation complex beta subunit; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.618
pmbA
PmbA protein, putative.
       0.573
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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