Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RD1_3180 | crtB | RD1_3180 | RD1_0119 | Conserved hypothetical protein. | Phytoene synthase. | 0.907 |
RD1_3180 | crtE | RD1_3180 | RD1_0114 | Conserved hypothetical protein. | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | 0.879 |
RD1_3180 | idi | RD1_3180 | RD1_0147 | Conserved hypothetical protein. | Isopentyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.436 |
RD1_3180 | ispA | RD1_3180 | RD1_0549 | Conserved hypothetical protein. | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | 0.879 |
RD1_3180 | ispB | RD1_3180 | RD1_3401 | Conserved hypothetical protein. | Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.879 |
RD1_3180 | uppS | RD1_3180 | RD1_2587 | Conserved hypothetical protein. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.825 |
crtB | RD1_3180 | RD1_0119 | RD1_3180 | Phytoene synthase. | Conserved hypothetical protein. | 0.907 |
crtB | crtE | RD1_0119 | RD1_0114 | Phytoene synthase. | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | 0.983 |
crtB | idi | RD1_0119 | RD1_0147 | Phytoene synthase. | Isopentyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.639 |
crtB | ispA | RD1_0119 | RD1_0549 | Phytoene synthase. | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | 0.915 |
crtB | ispB | RD1_0119 | RD1_3401 | Phytoene synthase. | Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.891 |
crtB | uppS | RD1_0119 | RD1_2587 | Phytoene synthase. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.825 |
crtE | RD1_3180 | RD1_0114 | RD1_3180 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | Conserved hypothetical protein. | 0.879 |
crtE | crtB | RD1_0114 | RD1_0119 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | Phytoene synthase. | 0.983 |
crtE | dxs | RD1_0114 | RD1_0101 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | 1-deoxy-D-xylulose-5-phosphate synthase, putative; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.480 |
crtE | dxs-2 | RD1_0114 | RD1_0548 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.486 |
crtE | idi | RD1_0114 | RD1_0147 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | Isopentyl-diphosphate delta-isomerase; Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.942 |
crtE | ispA | RD1_0114 | RD1_0549 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | Geranyltranstransferase; Belongs to the FPP/GGPP synthase family. | 0.933 |
crtE | ispB | RD1_0114 | RD1_3401 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.915 |
crtE | ispH | RD1_0114 | RD1_1355 | Geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.942 |
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