STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_0783Sulfate transporter, permease protein, putative. (581 aa)    
Predicted Functional Partners:
RD1_0784
Conserved hypothetical protein.
 
    0.858
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.803
RD1_0785
Metallo-beta-lactamase family protein.
     0.789
nuoM
NADH-quinone oxidoreductase chain M.
  
 
 0.708
RD1_0787
YeeE/YedE domain protein.
 
    0.689
RD1_0786
Conserved hypothetical protein.
    0.667
RD1_0788
Hypothetical protein.
 
     0.617
RD1_0533
Metallo-beta-lactamase family protein.
     0.536
phaA
pH adaption potassium efflux system protein PhaA.
  
  
 0.517
RD1_0789
Cyclic nucleotide-binding protein, putative.
 
  
 0.450
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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