STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_1072Putative cyclooxygenase. (520 aa)    
Predicted Functional Partners:
RD1_0182
Conserved hypothetical protein.
  
    0.521
RD1_1073
Conserved hypothetical protein.
       0.503
RD1_2838
Conserved hypothetical protein.
  
   0.476
RD1_1240
Conserved hypothetical protein.
  
     0.475
RD1_1345
Dimethylglycine dehydrogenase, putative; Belongs to the GcvT family.
  
     0.471
RD1_4162
Acetyltransferase, putative.
  
     0.428
RD1_4114
BlaR1 peptidase M56 domain protein.
  
     0.422
RD1_1074
Conserved hypothetical protein.
       0.418
RD1_1075
Conserved hypothetical protein.
       0.418
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.