STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_2341Glycosyltransferase, putative. (346 aa)    
Predicted Functional Partners:
RD1_2344
Hypothetical protein.
 
    0.919
RD1_2345
Conserved hypothetical protein.
 
  
 0.917
RD1_2346
Conserved hypothetical protein.
 
  
 0.917
RD1_2342
ABC transporter, permease protein, putative.
 
    0.912
RD1_2347
Conserved hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.909
RD1_2343
ABC transporter, ATP-binding protein, putative.
 
  
 0.866
RD1_1699
Bacterial sugar transferase.
 
  
 0.783
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.656
RD1_3542
ATP-dependent DNA helicase, UvrD/REP family domain.
    
 
 0.653
RD1_3835
Chain length determinant domain protein.
 
  
 0.653
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.