STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3028Phage major capsid protein, putative. (392 aa)    
Predicted Functional Partners:
RD1_3030
Phage prohead protease, putative.
  
 0.996
RD1_3033
Phage portal protein, putative.
 
 
 0.991
RD1_3026
Phage head-tail adaptor, putative.
 
 
 0.990
RD1_3027
Conserved hypothetical protein.
 
 
 0.989
RD1_3025
Conserved hypothetical protein.
 
 
   0.986
RD1_3024
Conserved hypothetical protein.
 
   0.985
RD1_3018
Conserved hypothetical protein.
 
 
 0.979
RD1_3019
Conserved hypothetical protein.
 
 
 
 0.979
RD1_3016
Conserved hypothetical protein.
 
 
   0.975
RD1_3020
Conserved hypothetical protein.
 
    0.914
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.