STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RD1_3615Hypothetical protein. (443 aa)    
Predicted Functional Partners:
glpD
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.916
gpsA
Glycerol-3-phosphate dehydrogenase, putative; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.915
RD1_1601
Acyltransferase, putative.
     
 0.804
RD1_3621
ABC transporter, substrate-binding protein, putative.
 
  
 0.797
xylB
Xylulose kinase, putative; Belongs to the FGGY kinase family.
 
   
 0.716
RD1_3616
Oxidoreductase, short-chain dehydrogenase, reductase family.
       0.712
RD1_3618
Hydrolase, putative.
  
  
 0.638
RD1_3614
Glycerone kinase, putative.
 
     0.624
RD1_3640
Sugar ABC transporter, substrate-binding, putative.
 
  
 0.621
RD1_3630
Conserved hypothetical protein.
  
     0.565
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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