Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RD1_3730 | RD1_3731 | RD1_3730 | RD1_3731 | ABC1 family protein. | Conserved hypothetical protein. | 0.463 |
RD1_3730 | RD1_3732 | RD1_3730 | RD1_3732 | ABC1 family protein. | Hypothetical protein. | 0.463 |
RD1_3730 | RD1_4036 | RD1_3730 | RD1_4036 | ABC1 family protein. | Hypothetical protein; Belongs to the UPF0312 family. | 0.400 |
RD1_3730 | lktD | RD1_3730 | RD1_3728 | ABC1 family protein. | Leukotoxin secretion protein D, putative. | 0.453 |
RD1_3730 | ubiG-2 | RD1_3730 | RD1_0737 | ABC1 family protein. | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | 0.400 |
RD1_3731 | RD1_3730 | RD1_3731 | RD1_3730 | Conserved hypothetical protein. | ABC1 family protein. | 0.463 |
RD1_3731 | RD1_3732 | RD1_3731 | RD1_3732 | Conserved hypothetical protein. | Hypothetical protein. | 0.773 |
RD1_3732 | RD1_3730 | RD1_3732 | RD1_3730 | Hypothetical protein. | ABC1 family protein. | 0.463 |
RD1_3732 | RD1_3731 | RD1_3732 | RD1_3731 | Hypothetical protein. | Conserved hypothetical protein. | 0.773 |
RD1_4036 | RD1_3730 | RD1_4036 | RD1_3730 | Hypothetical protein; Belongs to the UPF0312 family. | ABC1 family protein. | 0.400 |
lktD | RD1_3730 | RD1_3728 | RD1_3730 | Leukotoxin secretion protein D, putative. | ABC1 family protein. | 0.453 |
ubiG-2 | RD1_3730 | RD1_0737 | RD1_3730 | 3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Belongs to the methyltransferase superfamily. UbiG/COQ3 family. | ABC1 family protein. | 0.400 |