STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nasSNitrate transport ATP-binding protein. (377 aa)    
Predicted Functional Partners:
nasT
Response regulator NasT.
 
  
 0.966
nasE
Nitrate ABC transporter, permease component.
  
 0.924
nasD
Nitrate ABC transporter protein, ATP binding component.
     0.910
nasA
Nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.896
nirB
Assimilatory nitrite reductase, large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.865
nirD-2
Assimilatory nitrite reductase, small subunit.
 
  
 0.864
RD1_2343
ABC transporter, ATP-binding protein, putative.
 
  
 0.862
tauB
Taurine ABC transporter, ATP-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family.
 
  
 0.834
RD1_3099
ABC transporter, ATP-binding protein, putative.
 
  
 0.802
RD1_0754
ABC transporter, ATP-binding protein, putative.
 
  
 0.749
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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