BF49_3196 protein (Bradyrhizobium sp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BF49_3196

Zinc ABC transporter inner membrane permease protein ZnuB. (289 aa)

Predicted Functional Partners:

BF49_3195

0.999

BF49_3197

0.998

BF49_3198

0.801

BF49_3194

0.753

BF49_4706

0.701

BF49_5513

0.701

mntH

0.701

BF49_3193

0.698

BF49_3200

0.680

BF49_3199

0.648

Your Current Organism:

Bradyrhizobium sp.

NCBI taxonomy Id: 376
Other names: B. sp.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BF49_3193	BF49_3194	BF49_3193	BF49_3194	Highaffnity carbon uptake protein HatHatR.	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	0.934
BF49_3193	BF49_3195	BF49_3193	BF49_3195	Highaffnity carbon uptake protein HatHatR.	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	0.655
BF49_3193	BF49_3196	BF49_3193	BF49_3196	Highaffnity carbon uptake protein HatHatR.	Zinc ABC transporter inner membrane permease protein ZnuB.	0.698
BF49_3193	BF49_3197	BF49_3193	BF49_3197	Highaffnity carbon uptake protein HatHatR.	Zinc ABC transporter ATPbinding protein ZnuC.	0.654
BF49_3193	BF49_3198	BF49_3193	BF49_3198	Highaffnity carbon uptake protein HatHatR.	Hypothetical protein.	0.621
BF49_3193	BF49_3199	BF49_3193	BF49_3199	Highaffnity carbon uptake protein HatHatR.	Bll7773 protein.	0.515
BF49_3193	BF49_3200	BF49_3193	BF49_3200	Highaffnity carbon uptake protein HatHatR.	Bll7773 protein.	0.515
BF49_3194	BF49_3193	BF49_3194	BF49_3193	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	Highaffnity carbon uptake protein HatHatR.	0.934
BF49_3194	BF49_3195	BF49_3194	BF49_3195	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	0.913
BF49_3194	BF49_3196	BF49_3194	BF49_3196	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	Zinc ABC transporter inner membrane permease protein ZnuB.	0.753
BF49_3194	BF49_3197	BF49_3194	BF49_3197	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	Zinc ABC transporter ATPbinding protein ZnuC.	0.747
BF49_3194	BF49_3198	BF49_3194	BF49_3198	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	Hypothetical protein.	0.624
BF49_3194	BF49_3199	BF49_3194	BF49_3199	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	Bll7773 protein.	0.521
BF49_3194	BF49_3200	BF49_3194	BF49_3200	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	Bll7773 protein.	0.573
BF49_3195	BF49_3193	BF49_3195	BF49_3193	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	Highaffnity carbon uptake protein HatHatR.	0.655
BF49_3195	BF49_3194	BF49_3195	BF49_3194	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	Putative metal chaperone involved in Zn homeostasis GTPase of COG0523 family.	0.913
BF49_3195	BF49_3196	BF49_3195	BF49_3196	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	Zinc ABC transporter inner membrane permease protein ZnuB.	0.999
BF49_3195	BF49_3197	BF49_3195	BF49_3197	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	Zinc ABC transporter ATPbinding protein ZnuC.	0.996
BF49_3195	BF49_3198	BF49_3195	BF49_3198	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	Hypothetical protein.	0.799
BF49_3195	BF49_3199	BF49_3195	BF49_3199	Zinc ABC transporter periplasmicbinding protein ZnuA; Belongs to the bacterial solute-binding protein 9 family.	Bll7773 protein.	0.647