Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:			Neighborhood	Gene Fusion	Cooccurence	Coexpression	Experiments	Databases	Textmining	[Homology]	Score
	18767585	Uncharacterized protein (321 aa)
Predicted Functional Partners:
	18775321	Uncharacterized protein (1981 aa)									0.880
	18771128	Uncharacterized protein (475 aa)									0.843
	18785506	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway (638 aa)									0.721
	18770626	NAC transcription factor NAC3 (367 aa)									0.706
	18771049	Uncharacterized protein (343 aa)									0.659
	18793311	Uncharacterized protein (561 aa)									0.655
	18766910	Uncharacterized protein; Belongs to the globin family (157 aa)									0.610
	18770210	Uncharacterized protein; Belongs to the iron/ascorbate-dependent oxidoreductase family (300 aa)									0.579
	18767780	Uncharacterized protein (379 aa)									0.543
	18766425	Uncharacterized protein (379 aa)									0.543

Your Current Organism:

Prunus persica

NCBI taxonomy Id: 3760
Other names: Amygdalus persica, P. persica, Persica vulgaris, Persica vulgaris Mill., Prunus persica, Prunus persica (L.) Batsch, Prunus persica var. densa, Prunus persica var. densa Makino, peach

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
18766425	18766910	EMJ02248	EMJ02492	Uncharacterized protein	Uncharacterized protein; Belongs to the globin family	0.428
18766425	18767585	EMJ02248	EMJ01617	Uncharacterized protein	Uncharacterized protein	0.543
18766425	18775321	EMJ02248	EMJ06145	Uncharacterized protein	Uncharacterized protein	0.414
18766910	18766425	EMJ02492	EMJ02248	Uncharacterized protein; Belongs to the globin family	Uncharacterized protein	0.428
18766910	18767585	EMJ02492	EMJ01617	Uncharacterized protein; Belongs to the globin family	Uncharacterized protein	0.610
18766910	18767780	EMJ02492	EMJ02252	Uncharacterized protein; Belongs to the globin family	Uncharacterized protein	0.428
18766910	18775321	EMJ02492	EMJ06145	Uncharacterized protein; Belongs to the globin family	Uncharacterized protein	0.557
18767585	18766425	EMJ01617	EMJ02248	Uncharacterized protein	Uncharacterized protein	0.543
18767585	18766910	EMJ01617	EMJ02492	Uncharacterized protein	Uncharacterized protein; Belongs to the globin family	0.610
18767585	18767780	EMJ01617	EMJ02252	Uncharacterized protein	Uncharacterized protein	0.543
18767585	18770210	EMJ01617	EMJ03566	Uncharacterized protein	Uncharacterized protein; Belongs to the iron/ascorbate-dependent oxidoreductase family	0.579
18767585	18770626	EMJ01617	EMJ03289	Uncharacterized protein	NAC transcription factor NAC3	0.706
18767585	18771049	EMJ01617	EMJ04857	Uncharacterized protein	Uncharacterized protein	0.659
18767585	18771128	EMJ01617	EMJ03229	Uncharacterized protein	Uncharacterized protein	0.843
18767585	18775321	EMJ01617	EMJ06145	Uncharacterized protein	Uncharacterized protein	0.880
18767585	18785506	EMJ01617	EMJ21732	Uncharacterized protein	Arginyl-tRNA--protein transferase; Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway	0.721
18767585	18793311	EMJ01617	EMJ26927	Uncharacterized protein	Uncharacterized protein	0.655
18767780	18766910	EMJ02252	EMJ02492	Uncharacterized protein	Uncharacterized protein; Belongs to the globin family	0.428
18767780	18767585	EMJ02252	EMJ01617	Uncharacterized protein	Uncharacterized protein	0.543
18767780	18775321	EMJ02252	EMJ06145	Uncharacterized protein	Uncharacterized protein	0.414

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