STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFR58248.1Homocitrate synthase NifV; Belongs to the alpha-IPM synthase/homocitrate synthase family. (277 aa)    
Predicted Functional Partners:
SFR58262.1
Homocitrate synthase NifV.
 
  
 0.975
SFR57923.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.955
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
 
 0.927
leuB
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
 
 0.888
SFR57352.1
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; Belongs to the LeuD family.
 
 
 0.860
SFR57423.1
2-oxosuberate synthase, isomerase small subunit; Belongs to the LeuD family.
 
 
 0.860
SFR57337.1
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; Belongs to the LeuD family.
 
 
 0.857
SFR58236.1
Fe-only nitrogenase accessory protein AnfO.
 
     0.851
SFR58222.1
Hypothetical protein.
 
     0.844
SFR93774.1
Branched chain amino acid aminotransferase apoenzyme.
  
 0.835
Your Current Organism:
Clostridium populeti
NCBI taxonomy Id: 37658
Other names: ATCC 35295, DSM 5832, [. populeti, [Clostridium] populeti, strain 743A
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.