STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (502 aa)    
Predicted Functional Partners:
Fjoh_1119
TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase, FGGY; Belongs to the ribulokinase family.
 
 
 0.997
araD
L-ribulose-5-phosphate 4-epimerase; Class II aldolase/adducin family protein.
 
 
 0.993
Fjoh_1118
PFAM: alpha-L-arabinofuranosidase domain protein.
 
 
 0.955
Fjoh_3113
Candidate alpha-L-arabinofuranosidase; PFAM: Carbohydrate-binding, CenC domain protein; alpha-L-arabinofuranosidase domain protein.
 
 
 0.877
Fjoh_3109
Candidate beta-D-/alpha-L-glycosidase; Two Glycoside hydrolase family 43 modules.
 
 
 0.858
Fjoh_3880
Candidate beta-xylosidase/alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.854
Fjoh_2027
Candidate beta-D-glycosidase/alpha-L-glycosidase; Predicted lipoprotein; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.848
Fjoh_0776
Candidate beta-xylosidase; PFAM: glycoside hydrolase, family 39.
     
  0.800
Fjoh_1122
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
 0.578
Fjoh_2025
Candidate alpha-L-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.517
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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