STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fjoh_1402Beta-phosphoglucomutase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase; beta-phosphoglucomutase family hydrolase; PFAM: Haloacid dehalogenase domain protein hydrolase. (219 aa)    
Predicted Functional Partners:
Fjoh_1401
Candidate maltose phosphorylase; PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.
 
 0.999
Fjoh_2641
Candidate alpha glycoside phosphorylase; PFAM: glycoside hydrolase family 65, central catalytic.
  
 0.975
Fjoh_1403
PFAM: major facilitator superfamily MFS_1.
 
    0.881
Fjoh_4428
Candidate alpha glycoside phosphorylase; PFAM: glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein.
  
 0.772
Fjoh_4184
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
  
     0.687
Fjoh_1399
Candidate alpha glycosidase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.644
Fjoh_1404
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator.
 
   
 0.597
Fjoh_1398
Candidate alpha glycosidase; Related to alpha amylases; predicted lipoprotein.
 
  
 0.552
Fjoh_1210
Candidate alpha glycosidase; Predicted lipoprotein.
 
  
 0.409
Fjoh_1408
Candidate alpha-glycosidase; Glycoside hydrolase family 13; D5 module; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.405
Your Current Organism:
Flavobacterium johnsoniae
NCBI taxonomy Id: 376686
Other names: F. johnsoniae UW101, Flavobacterium johnsoniae ATCC 17061, Flavobacterium johnsoniae DSM 2064, Flavobacterium johnsoniae IAM 14304, Flavobacterium johnsoniae IFO 14942, Flavobacterium johnsoniae MYX.1.1.1, Flavobacterium johnsoniae NBRC 14942, Flavobacterium johnsoniae NCIB 11054, Flavobacterium johnsoniae UW101, Flavobacterium johnsoniae str. UW101, Flavobacterium johnsoniae strain UW101
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