Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ATP_00123 | ATP_00126 | ATP_00123 | ATP_00126 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Putative metallophosphoesterase. | 0.602 |
ATP_00123 | cmk | ATP_00123 | ATP_00122 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.989 |
ATP_00123 | efp | ATP_00123 | ATP_00124 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.698 |
ATP_00123 | engA | ATP_00123 | ATP_00121 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.865 |
ATP_00123 | gpsA | ATP_00123 | ATP_00120 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.743 |
ATP_00123 | miaA | ATP_00123 | ATP_00125 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.717 |
ATP_00123 | rny | ATP_00123 | ATP_00127 | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | Putative phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.553 |
ATP_00126 | ATP_00123 | ATP_00126 | ATP_00123 | Putative metallophosphoesterase. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.602 |
ATP_00126 | cmk | ATP_00126 | ATP_00122 | Putative metallophosphoesterase. | Cytidylate kinase. | 0.595 |
ATP_00126 | efp | ATP_00126 | ATP_00124 | Putative metallophosphoesterase. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.746 |
ATP_00126 | engA | ATP_00126 | ATP_00121 | Putative metallophosphoesterase. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.600 |
ATP_00126 | gpsA | ATP_00126 | ATP_00120 | Putative metallophosphoesterase. | Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.557 |
ATP_00126 | miaA | ATP_00126 | ATP_00125 | Putative metallophosphoesterase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.771 |
ATP_00126 | rny | ATP_00126 | ATP_00127 | Putative metallophosphoesterase. | Putative phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.813 |
cmk | ATP_00123 | ATP_00122 | ATP_00123 | Cytidylate kinase. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.989 |
cmk | ATP_00126 | ATP_00122 | ATP_00126 | Cytidylate kinase. | Putative metallophosphoesterase. | 0.595 |
cmk | efp | ATP_00122 | ATP_00124 | Cytidylate kinase. | Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.688 |
cmk | engA | ATP_00122 | ATP_00121 | Cytidylate kinase. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.992 |
cmk | gpsA | ATP_00122 | ATP_00120 | Cytidylate kinase. | Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.911 |
cmk | miaA | ATP_00122 | ATP_00125 | Cytidylate kinase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.680 |
page 1 of 4