STRINGSTRING
TERTU_0007 protein (Teredinibacter turnerae) - STRING interaction network
"TERTU_0007" - LysR family transcriptional regulator in Teredinibacter turnerae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TERTU_0007LysR family transcriptional regulator (298 aa)    
Predicted Functional Partners:
TERTU_3313
LysR family transcriptional regulator (305 aa)
   
          0.774
TERTU_2251
LysR family transcriptional regulator (298 aa)
   
          0.749
TERTU_3895
LysR family transcriptional regulator (294 aa)
   
          0.728
oxyR
Redox-sensitive transcriptional activator OxyR (310 aa)
   
          0.692
TERTU_0006
Antioxidant, AhpC/TSA family protein (236 aa)
              0.649
TERTU_1742
CysB family transcriptional regulator (319 aa)
   
          0.464
TERTU_4433
Transcriptional regulator (231 aa)
   
          0.400
Your Current Organism:
Teredinibacter turnerae
NCBI taxonomy Id: 377629
Other names: A. genera incertae sedis, Alteromonadales genera incertae sedis, T. turnerae, T. turnerae T7901, Teredinibacter, Teredinibacter Distel et al. 2002, Teredinibacter turnerae, Teredinibacter turnerae Distel et al. 2002, Teredinibacter turnerae T7901, Teredinibacter turnerae str. T7901, Teredinibacter turnerae strain T7901
Server load: low (8%) [HD]