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rsmB protein (Teredinibacter turnerae) - STRING interaction network
"rsmB" - Ribosomal RNA small subunit methyltransferase B in Teredinibacter turnerae
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second shell of interactors
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rsmBRibosomal RNA small subunit methyltransferase B (433 aa)    
Predicted Functional Partners:
fmt
methionyl-tRNA formyltransferase; Modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by- (I) promoting its recognition by IF2 and (II) impairing its binding to EFTu-GTP (321 aa)
 
   
  0.956
rpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (560 aa)
     
      0.917
ksgA
Dimethyladenosine transferaseS-adenosylmethionine-6-N’,N’-adenosyl dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (267 aa)
 
 
  0.911
ftsJ
Ribosomal RNA large subunit methyltransferase J; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (206 aa)
   
 
  0.894
TERTU_0034
Potassium transporter peripheral membrane component (483 aa)
   
        0.879
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (176 aa)
     
      0.870
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP (525 aa)
 
        0.862
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (168 aa)
   
      0.850
rpmD
Ribosomal protein L30 (61 aa)
     
      0.847
TERTU_0033
TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA (482 aa)
              0.817
Your Current Organism:
Teredinibacter turnerae
NCBI taxonomy Id: 377629
Other names: A. genera incertae sedis, Alteromonadales genera incertae sedis, T. turnerae, T. turnerae T7901, Teredinibacter, Teredinibacter Distel et al. 2002, Teredinibacter turnerae, Teredinibacter turnerae Distel et al. 2002, Teredinibacter turnerae T7901, Teredinibacter turnerae str. T7901, Teredinibacter turnerae strain T7901
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