STRINGSTRING
TERTU_0038 protein (Teredinibacter turnerae) - STRING interaction network
"TERTU_0038" - Peptidoglycan-binding LysM in Teredinibacter turnerae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TERTU_0038Peptidoglycan-binding LysM (346 aa)    
Predicted Functional Partners:
TERTU_0039
SMF protein (389 aa)
   
   
  0.865
TERTU_3581
Fimbrial assembly protein PilQ (727 aa)
   
   
  0.789
TERTU_3582
Type 4 fimbrial biogenesis protein PilP (176 aa)
   
        0.785
TERTU_3584
Periplasmic sensor signal transduction histidine kinase (186 aa)
   
        0.783
TERTU_3583
Type 4 fimbrial biogenesis protein PilO (207 aa)
 
        0.782
TERTU_3585
Response regulator receiver domain-containing protein (355 aa)
   
        0.781
TERTU_1728
Type 4 fimbrial biogenesis protein PilZ (117 aa)
   
        0.781
TERTU_3172
Type IV pilus biogenesis protein (1245 aa)
   
        0.771
TERTU_1047
Tfp pilus assembly protein, tip-associated adhesin PilY1 (1215 aa)
   
        0.769
TERTU_1051
Sensor protein PilS (554 aa)
   
        0.759
Your Current Organism:
Teredinibacter turnerae
NCBI taxonomy Id: 377629
Other names: A. genera incertae sedis, Alteromonadales genera incertae sedis, T. turnerae, T. turnerae T7901, Teredinibacter, Teredinibacter Distel et al. 2002, Teredinibacter turnerae, Teredinibacter turnerae Distel et al. 2002, Teredinibacter turnerae T7901, Teredinibacter turnerae str. T7901, Teredinibacter turnerae strain T7901
Server load: low (10%) [HD]