• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
TERTU_0054 protein (Teredinibacter turnerae T7901) - STRING interaction network
"TERTU_0054" - Transcriptional regulator, XRE family in Teredinibacter turnerae T7901
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TERTU_0054Transcriptional regulator, XRE family; Identified by match to protein family HMM PF01297 (297 aa)    
Predicted Functional Partners:
znuC
Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family (247 aa)
 
 
  0.976
TERTU_0051
High-affinity zinc uptake system membrane protein ZnuB; Identified by match to protein family HMM PF00950 (265 aa)
 
 
  0.968
TERTU_0053
annotation not available (160 aa)
         
  0.623
TERTU_3578
Identified by match to protein family HMM PF05036 (487 aa)
 
          0.593
TERTU_1696
annotation not available (772 aa)
 
   
  0.524
TERTU_3682
Identified by match to protein family HMM PF06295 (167 aa)
   
          0.518
TERTU_0049
annotation not available (551 aa)
 
          0.499
TERTU_1862
Uncharacterized protein; Identified by glimmer; putative (468 aa)
   
          0.494
TERTU_2991
Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 (796 aa)
         
  0.490
TERTU_2511
annotation not available (286 aa)
   
          0.478
Your Current Organism:
Teredinibacter turnerae T7901
NCBI taxonomy Id: 377629
Other names: T. turnerae T7901, Teredinibacter turnerae T7901, Teredinibacter turnerae str. T7901, Teredinibacter turnerae strain T7901
Server load: low (10%) [HD]