STRINGSTRING
TERTU_0130 protein (Teredinibacter turnerae) - STRING interaction network
"TERTU_0130" - Pectate lyase in Teredinibacter turnerae
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TERTU_0130Pectate lyase (422 aa)    
Predicted Functional Partners:
TERTU_0129
Carbohydrate binding module family 13 domain-containing protein (275 aa)
 
     
  0.907
TERTU_2314
Pectinesterase (799 aa)
          0.814
TERTU_1484
Pectinesterase (422 aa)
          0.807
TERTU_0428
Glycoside hydrolase family 11 and family 5 domain-containing protein (894 aa)
   
     
  0.760
TERTU_2321
Carbohydrate esterase family 12 (688 aa)
 
          0.759
TERTU_4225
alpha-L-arabinofuranosidase C (655 aa)
   
          0.746
TERTU_3447
Xylanase / methyl-glucuronoyl esterase (1051 aa)
   
          0.746
TERTU_1681
Xylanase (369 aa)
   
          0.741
TERTU_4238
Glycoside hydrolase family 62 domain-containing protein (372 aa)
   
          0.736
TERTU_3603
Acetylxylan esterase / xylanase (952 aa)
   
          0.733
Your Current Organism:
Teredinibacter turnerae
NCBI taxonomy Id: 377629
Other names: A. genera incertae sedis, Alteromonadales genera incertae sedis, T. turnerae, T. turnerae T7901, Teredinibacter, Teredinibacter Distel et al. 2002, Teredinibacter turnerae, Teredinibacter turnerae Distel et al. 2002, Teredinibacter turnerae T7901, Teredinibacter turnerae str. T7901, Teredinibacter turnerae strain T7901
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