STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betAPutative choline oxidase. (528 aa)    
Predicted Functional Partners:
betB
Putative betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.966
KRH_22310
Oxidoreductase.
  
  
 
0.920
KRH_00840
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.913
qcrC
Menaquinol-cytochrome c reductase cytochrome c subunit.
  
 
 0.837
KRH_15510
Hypothetical protein.
  
 
 0.818
KRH_15420
Hypothetical protein.
    
 0.681
KRH_20120
Hypothetical protein.
    
 0.681
betT
Choline transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
  
  
 0.555
purK/purE
Phosphoribosylaminoimidazole carboxylase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR); Belongs to the PurK/PurT family.
 
      0.442
Your Current Organism:
Kocuria rhizophila
NCBI taxonomy Id: 378753
Other names: K. rhizophila DC2201, Kocuria rhizophila ATCC 9341, Kocuria rhizophila DC2201, Kocuria rhizophila DSM 348, Kocuria rhizophila NBRC 103217, Kocuria rhizophila str. DC2201, Kocuria rhizophila strain DC2201, Micrococcus luteus ATCC 9341
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