STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU_3758Putative oxidoreductase. (428 aa)    
Predicted Functional Partners:
GAU_3541
Putative oxidoreductase.
  
 0.800
GAU_3757
Hypothetical membrane protein.
       0.528
GAU_3759
Hypothetical protein.
       0.508
GAU_3760
Hypothetical protein.
       0.508
GAU_3761
Hypothetical protein.
       0.508
dkg
2,5-diketo-D-gluconate reductase.
 
  
 0.501
paaZ
Phenylacetic acid degradation protein.
  
 
 0.498
GAU_3218
seryl-AMP ligase; Protein synonym: serine activating enzyme; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.474
GAU_0657
Threonine 3-dehydrogenase.
 
  
 0.461
GAU_2900
Alcohol dehydrogenase.
  
   
 0.400
Your Current Organism:
Gemmatimonas aurantiaca
NCBI taxonomy Id: 379066
Other names: G. aurantiaca T-27, Gemmatimonas aurantiaca DSM 14586, Gemmatimonas aurantiaca JCM 11422, Gemmatimonas aurantiaca NBRC 100505, Gemmatimonas aurantiaca T-27, Gemmatimonas aurantiaca str. T-27, Gemmatimonas aurantiaca strain T-27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.