STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMM33098.12-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Pfam:pfam01557 Fumarylacetoacetate (FAA) hydrolase family. (262 aa)    
Predicted Functional Partners:
AMM34341.1
Peptidase M38; Pfam:pfam01979 Amidohydrolase family.
      0.783
gltX
Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
    0.575
AMM33099.1
Hypothetical protein; Pfam:pfam00005 ABC transporter.
       0.552
AMM33096.1
Pfam:pfam13419 Haloacid dehalogenase-like hydrolase.
  
   0.539
AMM30929.1
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
  
 
 0.479
argH
Pfam:pfam00206 Lyase.
 
  
 0.429
AMM31309.1
DNA ligase; Pfam:pfam01068 ATP dependent DNA ligase domain.
  
  
 0.420
AMM34151.1
Pfam:pfam13298 DNA polymerase Ligase (LigD).
  
  
 0.420
Your Current Organism:
Sinomonas atrocyanea
NCBI taxonomy Id: 37927
Other names: ATCC 13752, Arthrobacter atricyaneus, Arthrobacter atrocyaneus, CIP 102365, DSM 20127, KCTC 3377, LMG 3814, LMG:3814, NBRC 12956, S. atrocyanea
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