LELG_02801 protein (Lodderomyces elongisporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LELG_02801

Uncharacterized protein. (193 aa)

Predicted Functional Partners:

LELG_00072

0.915

LELG_05005

0.915

LELG_03820

0.914

LELG_01328

0.911

LELG_01329

0.911

LELG_02799

0.911

LELG_03056

0.907

LELG_04376

0.907

LELG_04500

0.904

LELG_01948

0.903

Your Current Organism:

Lodderomyces elongisporus

NCBI taxonomy Id: 379508
Other names: L. elongisporus NRRL YB-4239, Lodderomyces elongisporus NRRL YB-4239

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LELG_00072	LELG_01328	A5DRT6	A5DVE2	Mitochondrial peroxiredoxin PRX1.	Uncharacterized protein.	0.909
LELG_00072	LELG_01329	A5DRT6	A5DVE3	Mitochondrial peroxiredoxin PRX1.	Uncharacterized protein.	0.909
LELG_00072	LELG_01948	A5DRT6	A5DX61	Mitochondrial peroxiredoxin PRX1.	Protein URE2; Plays an important role in the cellular response to the nitrogen source; Belongs to the GST superfamily.	0.912
LELG_00072	LELG_02799	A5DRT6	A5DZL2	Mitochondrial peroxiredoxin PRX1.	Uncharacterized protein; Belongs to the GST superfamily.	0.915
LELG_00072	LELG_02801	A5DRT6	A5DZL4	Mitochondrial peroxiredoxin PRX1.	Uncharacterized protein.	0.915
LELG_00072	LELG_03056	A5DRT6	A5E0B9	Mitochondrial peroxiredoxin PRX1.	Glutathione synthetase.	0.905
LELG_00072	LELG_03820	A5DRT6	A5E2I3	Mitochondrial peroxiredoxin PRX1.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.942
LELG_00072	LELG_04376	A5DRT6	A5E437	Mitochondrial peroxiredoxin PRX1.	Uncharacterized protein; Belongs to the GST superfamily.	0.912
LELG_00072	LELG_04500	A5DRT6	A5E4G1	Mitochondrial peroxiredoxin PRX1.	Uncharacterized protein.	0.909
LELG_00072	LELG_05005	A5DRT6	A5E5W6	Mitochondrial peroxiredoxin PRX1.	Mitochondrial peroxiredoxin PRX1.	0.902
LELG_01328	LELG_00072	A5DVE2	A5DRT6	Uncharacterized protein.	Mitochondrial peroxiredoxin PRX1.	0.909
LELG_01328	LELG_01329	A5DVE2	A5DVE3	Uncharacterized protein.	Uncharacterized protein.	0.994
LELG_01328	LELG_01948	A5DVE2	A5DX61	Uncharacterized protein.	Protein URE2; Plays an important role in the cellular response to the nitrogen source; Belongs to the GST superfamily.	0.911
LELG_01328	LELG_02799	A5DVE2	A5DZL2	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.911
LELG_01328	LELG_02801	A5DVE2	A5DZL4	Uncharacterized protein.	Uncharacterized protein.	0.911
LELG_01328	LELG_03056	A5DVE2	A5E0B9	Uncharacterized protein.	Glutathione synthetase.	0.948
LELG_01328	LELG_03820	A5DVE2	A5E2I3	Uncharacterized protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.914
LELG_01328	LELG_04376	A5DVE2	A5E437	Uncharacterized protein.	Uncharacterized protein; Belongs to the GST superfamily.	0.911
LELG_01328	LELG_04500	A5DVE2	A5E4G1	Uncharacterized protein.	Uncharacterized protein.	0.916
LELG_01328	LELG_05005	A5DVE2	A5E5W6	Uncharacterized protein.	Mitochondrial peroxiredoxin PRX1.	0.909