STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL62809.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
SDK65842.1
Protein of unknown function; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.744
SDK68977.1
Phage shock protein A (PspA) family protein.
  
     0.732
SDL76866.1
Transcriptional regulator, TetR family.
  
     0.676
SDL83456.1
TIGR02569 family protein.
  
     0.675
SDL40547.1
Type VII secretion protein EccE.
  
     0.663
SDL38405.1
Chorismate mutase.
  
     0.658
SDK85162.1
Dynamin family protein.
  
     0.618
SDK57773.1
50S ribosome-binding GTPase.
  
     0.615
SDL06412.1
Protein of unknown function.
  
     0.612
SDL62822.1
DNA recombination protein RmuC.
       0.604
Your Current Organism:
Glycomyces sambucus
NCBI taxonomy Id: 380244
Other names: CGMCC 4.3147, DSM 45047, G. sambucus, Glycomyces sambucus Gu et al. 2007, Glycomyces sp. E71, JCM 15472, strain E71
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.