MRPL4 protein (Chaetomium globosum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MRPL4

54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family. (272 aa)

Predicted Functional Partners:

CHGG_00664

0.997

CHGG_04668

0.995

CHGG_07879

0.994

CHGG_08419

0.993

CHGG_07831

0.993

CHGG_05714

0.993

CHGG_05549

0.992

CHGG_03181

0.992

CHGG_00674

0.992

CHGG_09142

0.991

Your Current Organism:

Chaetomium globosum

NCBI taxonomy Id: 306901
Other names: C. globosum CBS 148.51, Chaetomium globosum CBS 148.51

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHGG_00664	CHGG_00674	Q2HGJ0	Q2HGI0	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.992
CHGG_00664	CHGG_03181	Q2HGJ0	Q2H9C3	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	MRP-L46 domain-containing protein.	0.991
CHGG_00664	CHGG_04668	Q2HGJ0	Q2H0M8	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.996
CHGG_00664	CHGG_05549	Q2HGJ0	Q2H716	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.998
CHGG_00664	CHGG_05714	Q2HGJ0	Q2H6K1	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.999
CHGG_00664	CHGG_07831	Q2HGJ0	Q2GW23	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.997
CHGG_00664	CHGG_07879	Q2HGJ0	Q2GVX5	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.998
CHGG_00664	CHGG_08419	Q2HGJ0	Q2GUD5	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
CHGG_00664	CHGG_09142	Q2HGJ0	Q2GSB2	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.996
CHGG_00664	MRPL4	Q2HGJ0	Q2H080	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family.	0.997
CHGG_00674	CHGG_00664	Q2HGI0	Q2HGJ0	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.992
CHGG_00674	CHGG_03181	Q2HGI0	Q2H9C3	Uncharacterized protein.	MRP-L46 domain-containing protein.	0.988
CHGG_00674	CHGG_04668	Q2HGI0	Q2H0M8	Uncharacterized protein.	Uncharacterized protein.	0.995
CHGG_00674	CHGG_05549	Q2HGI0	Q2H716	Uncharacterized protein.	Uncharacterized protein.	0.995
CHGG_00674	CHGG_05714	Q2HGI0	Q2H6K1	Uncharacterized protein.	Uncharacterized protein.	0.992
CHGG_00674	CHGG_07831	Q2HGI0	Q2GW23	Uncharacterized protein.	Uncharacterized protein.	0.990
CHGG_00674	CHGG_07879	Q2HGI0	Q2GVX5	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.997
CHGG_00674	CHGG_08419	Q2HGI0	Q2GUD5	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.994
CHGG_00674	CHGG_09142	Q2HGI0	Q2GSB2	Uncharacterized protein.	Uncharacterized protein.	0.990
CHGG_00674	MRPL4	Q2HGI0	Q2H080	Uncharacterized protein.	54S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family.	0.992